CDS

Accession Number TCMCG013C37167
gbkey CDS
Protein Id XP_015381461.1
Location join(38506..38602,38691..38782,40094..40169,41091..41159,41573..41691,42041..42107,42330..42421,42841..42978,43126..43230,43751..43834,44064..44159)
Gene LOC102617365
GeneID 102617365
Organism Citrus sinensis

Protein

Length 344aa
Molecule type protein
Topology linear
Data_file_division PLN
dblink BioProject:PRJNA225998
db_source XM_015525975.2
Definition endonuclease III homolog 1, chloroplastic-like isoform X3 [Citrus sinensis]

EGGNOG-MAPPER Annotation

COG_category L
Description Bifunctional DNA N-glycosylase with associated apurinic apyrimidinic (AP) lyase function that catalyzes the first step in base excision repair (BER), the primary repair pathway for the repair of oxidative DNA damage. The DNA N-glycosylase activity releases the damaged DNA base from DNA by cleaving the N- glycosidic bond, leaving an AP site. The AP lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination. Primarily recognizes and repairs oxidative base damage of pyrimidines
KEGG_TC -
KEGG_Module -
KEGG_Reaction -
KEGG_rclass -
BRITE ko00000        [VIEW IN KEGG]
ko00001        [VIEW IN KEGG]
ko01000        [VIEW IN KEGG]
ko03400        [VIEW IN KEGG]
KEGG_ko ko:K10773        [VIEW IN KEGG]
EC 4.2.99.18        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway ko03410        [VIEW IN KEGG]
map03410        [VIEW IN KEGG]
GOs GO:0000702        [VIEW IN EMBL-EBI]
GO:0000703        [VIEW IN EMBL-EBI]
GO:0003674        [VIEW IN EMBL-EBI]
GO:0003824        [VIEW IN EMBL-EBI]
GO:0003906        [VIEW IN EMBL-EBI]
GO:0005575        [VIEW IN EMBL-EBI]
GO:0005622        [VIEW IN EMBL-EBI]
GO:0005623        [VIEW IN EMBL-EBI]
GO:0005634        [VIEW IN EMBL-EBI]
GO:0005737        [VIEW IN EMBL-EBI]
GO:0005783        [VIEW IN EMBL-EBI]
GO:0005911        [VIEW IN EMBL-EBI]
GO:0006139        [VIEW IN EMBL-EBI]
GO:0006259        [VIEW IN EMBL-EBI]
GO:0006281        [VIEW IN EMBL-EBI]
GO:0006284        [VIEW IN EMBL-EBI]
GO:0006285        [VIEW IN EMBL-EBI]
GO:0006289        [VIEW IN EMBL-EBI]
GO:0006296        [VIEW IN EMBL-EBI]
GO:0006464        [VIEW IN EMBL-EBI]
GO:0006479        [VIEW IN EMBL-EBI]
GO:0006725        [VIEW IN EMBL-EBI]
GO:0006807        [VIEW IN EMBL-EBI]
GO:0006950        [VIEW IN EMBL-EBI]
GO:0006974        [VIEW IN EMBL-EBI]
GO:0008150        [VIEW IN EMBL-EBI]
GO:0008152        [VIEW IN EMBL-EBI]
GO:0008168        [VIEW IN EMBL-EBI]
GO:0008170        [VIEW IN EMBL-EBI]
GO:0008213        [VIEW IN EMBL-EBI]
GO:0008276        [VIEW IN EMBL-EBI]
GO:0008757        [VIEW IN EMBL-EBI]
GO:0009295        [VIEW IN EMBL-EBI]
GO:0009506        [VIEW IN EMBL-EBI]
GO:0009507        [VIEW IN EMBL-EBI]
GO:0009532        [VIEW IN EMBL-EBI]
GO:0009536        [VIEW IN EMBL-EBI]
GO:0009570        [VIEW IN EMBL-EBI]
GO:0009987        [VIEW IN EMBL-EBI]
GO:0012505        [VIEW IN EMBL-EBI]
GO:0016278        [VIEW IN EMBL-EBI]
GO:0016279        [VIEW IN EMBL-EBI]
GO:0016740        [VIEW IN EMBL-EBI]
GO:0016741        [VIEW IN EMBL-EBI]
GO:0016787        [VIEW IN EMBL-EBI]
GO:0016798        [VIEW IN EMBL-EBI]
GO:0016799        [VIEW IN EMBL-EBI]
GO:0018022        [VIEW IN EMBL-EBI]
GO:0018193        [VIEW IN EMBL-EBI]
GO:0018205        [VIEW IN EMBL-EBI]
GO:0019104        [VIEW IN EMBL-EBI]
GO:0019538        [VIEW IN EMBL-EBI]
GO:0030054        [VIEW IN EMBL-EBI]
GO:0032259        [VIEW IN EMBL-EBI]
GO:0033554        [VIEW IN EMBL-EBI]
GO:0033683        [VIEW IN EMBL-EBI]
GO:0034641        [VIEW IN EMBL-EBI]
GO:0036211        [VIEW IN EMBL-EBI]
GO:0042644        [VIEW IN EMBL-EBI]
GO:0042646        [VIEW IN EMBL-EBI]
GO:0043170        [VIEW IN EMBL-EBI]
GO:0043226        [VIEW IN EMBL-EBI]
GO:0043227        [VIEW IN EMBL-EBI]
GO:0043228        [VIEW IN EMBL-EBI]
GO:0043229        [VIEW IN EMBL-EBI]
GO:0043231        [VIEW IN EMBL-EBI]
GO:0043232        [VIEW IN EMBL-EBI]
GO:0043412        [VIEW IN EMBL-EBI]
GO:0043414        [VIEW IN EMBL-EBI]
GO:0044237        [VIEW IN EMBL-EBI]
GO:0044238        [VIEW IN EMBL-EBI]
GO:0044260        [VIEW IN EMBL-EBI]
GO:0044267        [VIEW IN EMBL-EBI]
GO:0044422        [VIEW IN EMBL-EBI]
GO:0044424        [VIEW IN EMBL-EBI]
GO:0044434        [VIEW IN EMBL-EBI]
GO:0044435        [VIEW IN EMBL-EBI]
GO:0044444        [VIEW IN EMBL-EBI]
GO:0044446        [VIEW IN EMBL-EBI]
GO:0044464        [VIEW IN EMBL-EBI]
GO:0046483        [VIEW IN EMBL-EBI]
GO:0050896        [VIEW IN EMBL-EBI]
GO:0051716        [VIEW IN EMBL-EBI]
GO:0055044        [VIEW IN EMBL-EBI]
GO:0071704        [VIEW IN EMBL-EBI]
GO:0090304        [VIEW IN EMBL-EBI]
GO:0090305        [VIEW IN EMBL-EBI]
GO:0140096        [VIEW IN EMBL-EBI]
GO:0140097        [VIEW IN EMBL-EBI]
GO:1901360        [VIEW IN EMBL-EBI]
GO:1901564        [VIEW IN EMBL-EBI]

Sequence

CDS:  
ATGTCTCATATTCTACTAAAAATGCCAAATTCAAGATTTTATTCCAAACGCCTTCTTCAACCCAATGCTAATTTCTCCACGTCACCGCCAAACCCAGAGCTTCGTGTTTTTGTGAGGAGAAAGAGGCAGAAAAATGCTCTGCAAATATCAAAAGAAGAGCCCAAAAATGAAGCACCCATTGAACACAAATCATGTGGCCTACCTGACATTGAAGAGTTTGCATACAAGGAGGCTAATGGATCTGCCCTTTCAAGTAAGATAGCTGGAAAATCAAAATCCACCCAAGATATGCCTGTTGTGGGAACTGAAGTTGCCTCTCTAAACAGAATGAGAGGCGAACCACCTGCCAATTGGGAAAGAGTTCTTGAGGGAATTCGCAAAATGAGGACTTCAGAGGATGCACCGGTAGACTCTATGGGATGTGAGAAAGCTGGCAGTTCTCTTCCTCCTAGGGAGAGAAGGTTTGCAGTGTTAATATCTTCACTTCTATCAAGTCAAACAAAGGATAATGTTACTCATGGAGCAATACAGCGTCTCCTTCAAAATGGTCTGCTTACTGCAGAAGCCATTGATAAAGCAGATGAAGCAACCATTAAGGATTTGATTTACCCGGTTGGATTTTATACAAGAAAGGCTAGTAATATGAAGAAAATTGCTCCAATTTGTCTCACAAAGTATGATGGGGACATACCTAGCTCATTGGATGAGTTGCTTTTGCTTCCAGGGATAGGCCCTAAGATGGCTCATTTGGTCATGAATGTTGGATGGAACAATGTTCAGGGGATATGTGTAGATACTCATGTGCATCGCATATGCAATCGCCTTGGATGGGTATCTCAGCCAGGCAGAAAACAGAAAACTTCATCCCCAGAGCAAACAAGAGAAGTGCTGCAACTTTGGCTTCCGAAGGAGGAATGGGTTCCCATTAACCCTCTCTTGATGGAATTCATTGACCGGATATGCACTTTAAATAGGTGGGATTCGGACAAACAATATGTACTCCAATCAGACCTCGCTGCGGGATGTGCAGTGTGA
Protein:  
MSHILLKMPNSRFYSKRLLQPNANFSTSPPNPELRVFVRRKRQKNALQISKEEPKNEAPIEHKSCGLPDIEEFAYKEANGSALSSKIAGKSKSTQDMPVVGTEVASLNRMRGEPPANWERVLEGIRKMRTSEDAPVDSMGCEKAGSSLPPRERRFAVLISSLLSSQTKDNVTHGAIQRLLQNGLLTAEAIDKADEATIKDLIYPVGFYTRKASNMKKIAPICLTKYDGDIPSSLDELLLLPGIGPKMAHLVMNVGWNNVQGICVDTHVHRICNRLGWVSQPGRKQKTSSPEQTREVLQLWLPKEEWVPINPLLMEFIDRICTLNRWDSDKQYVLQSDLAAGCAV